{ "_id": "6a169615acfb0bcc41d7b4fa", "Type": "Package", "Package": "normfluodbf", "Title": "Cleans and Normalizes FLUOstar DBF and DAT Files from 'Liposome'\nFlux Assays", "Version": "2.0.3", "Authors@R": "c(\nperson(\"Tingwei\", \"Adeck\", , \"awesome.tingwei@outlook.com\", role = c(\"aut\", \"cre\", \"cph\"),\ncomment = c(ORCID = \"0009-0009-7450-8863\")),\nperson(\"Tesla\", \"Adeck\", role = \"cph\"),\nperson(\"Amina\", \"Adeck\", role = \"cph\")\n)", "Description": "Cleans and Normalizes FLUOstar DBF and DAT Files obtained\nfrom liposome flux assays. Users should verify extended usage\nof the package on files from other assay types.", "License": "MIT + file LICENSE", "URL": "https://github.com/AlphaPrime7/normfluodbf,\nhttps://alphaprime7.github.io/normfluodbf/", "BugReports": "https://github.com/AlphaPrime7/normfluodbf/issues", "VignetteBuilder": "knitr", "Config/testthat/edition": "3", "Encoding": "UTF-8", "LazyData": "true", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.2", "Config/pak/sysreqs": "libcairo2-dev cmake libfontconfig1-dev\nlibfreetype6-dev git make libmagick++-dev gsfonts libgit2-dev\nlibicu-dev libpng-dev libuv1-dev libssl-dev libx11-dev\nlibzmq3-dev zlib1g-dev", "Repository": "https://alphaprime7.r-universe.dev", "Date/Publication": "2026-02-26 17:55:49 UTC", "RemoteUrl": "https://github.com/alphaprime7/normfluodbf", "RemoteRef": "HEAD", "RemoteSha": "70ab7265575b3c9a5e035f064c5cd8fad6708d99", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-27 06:52:10 UTC", "User": "root" }, "Author": "Tingwei Adeck [aut, cre, cph] (ORCID:\n),\nTesla Adeck [cph],\nAmina Adeck [cph]", "Maintainer": "Tingwei Adeck ", "MD5sum": "96074cf291b3ca091ad4bdd558b7bb6e", "_user": "alphaprime7", "_type": "src", "_file": "normfluodbf_2.0.3.tar.gz", "_fileid": "d669b5d955176a42998fd9c2258959a5840922dedd045ad660c737d70814c442", "_filesize": 17184263, "_sha256": "d669b5d955176a42998fd9c2258959a5840922dedd045ad660c737d70814c442", "_created": "2026-05-27T06:52:10.000Z", "_published": "2026-05-27T06:58:29.181Z", "_distro": "noble", "_jobs": [ { "job": 78023471530, "time": 201, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7233837440" }, { "job": 78023471581, "time": 207, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7233839098" }, { "job": 78023471523, "time": 185, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "7233844295" }, { "job": 78023471554, "time": 172, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7233863344" }, { "job": 78022922700, "time": 248, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7233782329" }, { "job": 78023471549, "time": 180, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7233831166" }, { "job": 78023471622, "time": 194, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "7233835415" }, { "job": 78023471564, "time": 176, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "7233830966" }, { "job": 78023471562, "time": 150, "config": "windows-release", "r": "4.6.0", "check": "NOTE", "artifact": "7233824135" } ], "_buildurl": "https://github.com/r-universe/alphaprime7/actions/runs/26495572875", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/alphaprime7/normfluodbf", "_commit": { "id": "70ab7265575b3c9a5e035f064c5cd8fad6708d99", "author": "SwaggyT <98990077+AlphaPrime7@users.noreply.github.com>", "committer": "GitHub ", "message": "Return numeric values from acu in normfluodbf_utils", "time": 1772128549 }, "_maintainer": { "name": "Tingwei Adeck", "email": "awesome.tingwei@outlook.com", "login": "alphaprime7", "uuid": 98990077 }, "_registered": true, "_dependencies": [ { "package": "data.table", "version": ">= 1.15.2", "role": "Depends" }, { "package": "dplyr", "version": ">= 1.1.4", "role": "Depends" }, { "package": "foreign", "version": ">= 0.8.86", "role": "Depends" }, { "package": "ggplot2", "version": ">= 3.5.0", "role": "Depends" }, { "package": "plotly", "version": ">= 4.10.4", "role": "Depends" }, { "package": "R", "version": ">= 4.3.0", "role": "Depends" }, { "package": "assertthat", "role": "Imports" }, { "package": "badger", "role": "Imports" }, { "package": "cli", "role": "Imports" }, { "package": "emojifont", "role": "Imports" }, { "package": "forcats", "role": "Imports" }, { "package": "glue", "role": "Imports" }, { "package": "gridExtra", "role": "Imports" }, { "package": "hexSticker", "role": "Imports" }, { "package": "httr2", "role": "Imports" }, { "package": "magrittr", "version": ">= 2.0.3", "role": "Imports" }, { "package": "pbdZMQ", "role": "Imports" }, { "package": "pkgsearch", "role": "Imports" }, { "package": "purrr", "version": ">= 1.0.2", "role": "Imports" }, { "package": "rlang", "version": ">= 1.1.3", "role": "Imports" }, { "package": "rstudioapi", "role": "Imports" }, { "package": "shiny", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "stringr", "role": "Imports" }, { "package": "testthat", "version": ">= 3.2.1", "role": "Imports" }, { "package": "tibble", "role": "Imports" }, { "package": "tidyr", "version": ">= 1.3.1", "role": "Imports" }, { "package": "wesanderson", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "learnr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" } ], "_owner": "alphaprime7", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-37", "n": 7 }, { "week": "2025-40", "n": 9 }, { "week": "2025-41", "n": 5 }, { "week": "2025-42", "n": 9 }, { "week": "2025-43", "n": 10 }, { "week": "2026-08", "n": 1 }, { "week": "2026-09", "n": 4 } ], "_tags": [ { "name": "v2.0.3", "date": "2025-10-05" } ], "_topics": [ "biophysics", "fluorometry", "flux-assays", "liposomes", "optics", "research" ], "_stars": 0, "_contributors": [ { "user": "alphaprime7", "count": 455, "uuid": 98990077 } ], "_userbio": { "uuid": 98990077, "type": "user", "name": "SwaggyT", "description": "The focused Nofun Creative." }, "_downloads": { "count": 578, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/normfluodbf" }, "_devurl": "https://github.com/alphaprime7/normfluodbf", "_pkgdown": "https://alphaprime7.github.io/normfluodbf/", "_searchresults": 9, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/normfluodbf.html", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/alphaprime7/normfluodbf", "_realowner": "alphaprime7", "_cranurl": true, "_releases": [ { "version": "1.4.3", "date": "2023-08-25" }, { "version": "1.5.0", "date": "2023-11-11" }, { "version": "1.5.1", "date": "2023-11-20" }, { "version": "1.5.2", "date": "2023-11-29" }, { "version": "2.0.0", "date": "2024-09-27" }, { "version": "2.0.3", "date": "2025-10-10" } ], "_exports": [ ".next_step", ".step_name", "actual_cols_used", "actual_cycles", "actual_rows_used", "add_package_namespace", "analyze_ready", "attach_dbfs", "average_fluorescence_by_row_cycle", "capitalize", "check_broken_packages", "check_cols_class", "check_dirt", "check_package_usage", "check_step", "child_plate_type", "clean_commas", "clean_even_dat", "clean_odddat_optimus", "comma_cleaner", "comment_out_lines", "dat_col_names_horizontal", "dat_col_names_optimus", "dat_col_names_prime", "dat_col_names_rigid", "decimal_scaling", "decimal_scaling_df", "define_params", "define_status", "define_steps", "detect_outliers_cn", "detect_outliers_time_cn", "dirty", "dirty<-", "empty_plate", "find_known_liposome_dat_file", "find_known_liposome_dbf_file", "find_random_port", "fix_threshold_output", "fluor_threshold_check", "fluor_threshold_check_na", "fluor_threshold_check_new", "format_plate_data", "generic_identifier", "get_common_dat_names", "get_dat_common_name", "get_dat_file_name", "get_dbf_file_name", "get_single_well", "get_status_value", "get_step_key_by_index", "get_tnp", "get_wells_btwn", "get_wells_used", "has_step", "init_plate", "is_dir", "is_file", "is_normalized", "is_plate_dirty", "is_range", "is_threshold_violated", "launch", "list_dats", "list_dbfs", "load_plate_data", "load_plate_data<-", "load_plate_meta", "load_plate_meta<-", "load_rds_plate", "log_transformation", "min_max_norm", "min_max_norm_df", "min_max_norm_percent", "min_max_norm_percent_df", "modify_plate_data", "move_file", "name", "name<-", "new_plate", "next_step", "norm_applier", "norm_tidy_dbf", "norm_z", "norm_z_df", "normalize", "normalize_by_well", "normalize_dataframe", "normfluodat", "normfluodatfull", "normfluodatlite", "normfluodbf", "normfluodbf_data", "normfluordat", "normfluordbf", "open_testfile", "params", "params<-", "parent_plate_type", "pkg_globals_cache", "plate_data", "plate_data_summary", "plate_meta", "plate_types", "plate_types_tbl", "plate_types_vector", "plot_grid", "quiet", "range_list_to_vec", "range_to_endpoints", "read_dbfs", "remove_leading_zero", "remove_outliers", "replace_word_in_file", "resample_dat", "resample_dat_alt", "resample_dat_scale", "resample_dat_scale_alt", "resample_dat_scale_alt_bf_na", "resample_dat_scale_alt_bfv", "resample_dat_scale_alt_na", "resample_dat_scale_naretainer", "resample_dat_scale_optimus", "resample_dat_scale_optimus_backend", "resample_dat_scale_optimus_na", "resample_dat_vect", "resample_vect_scale", "reset_plate", "roundfluor", "run_demo", "run_demo_bg", "run_demo_in_background", "run_demo_script", "run_steps", "sample_data_dir", "sample_data_file", "save_plate", "save_plot", "save_rds_plate", "search_pkg", "set_assiette_type", "set_default_params", "set_default_status", "set_default_steps", "set_plate_type", "set_plate_version", "setup_plate", "shiny_random_port", "status", "status<-", "step", "step_begin", "step_end", "step_name", "steps", "steps_complete", "steps<-", "subset", "subset_for_layout", "subset_unplated_data", "test_boilerplate", "time_it", "type", "unique_identifier", "update_status_list", "update_steps_list", "upload_data", "use_initialized_plate", "use_setup_plate", "var_str", "viewerpane_background_normfluodbf", "x_var_one", "x_var_one_label", "x_var_one_label<-", "x_var_one<-", "x_var_two", "x_var_two_label", "x_var_two_label<-", "x_var_two<-", "y_var", "y_var<-" ], "_datasets": [ { "name": "dat_1", "title": "dat_1.", "object": "dat_1", "class": [ "data.frame" ], "fields": [ "V1", "V2", "V3", "V4", "V5", "V6", "V7", "V8", "V9", "V10", "V11", "V12" ], "rows": 320, "table": true, "tojson": true }, { "name": "dat_2", "title": "dat_2.", "object": "dat_2", "class": [ "data.frame" ], "fields": [ "V1", "V2", "V3", "V4", "V5", "V6", "V7", "V8", "V9", "V10", "V11", "V12" ], "rows": 320, "table": true, "tojson": true }, { "name": "dat_3", "title": "dat_3.", "object": "dat_3", "class": [ "data.frame" ], "fields": [ "V1", "V2", "V3", "V4", "V5", "V6", "V7", "V8", "V9", "V10", "V11", "V12" ], "rows": 320, "table": true, "tojson": true }, { "name": "dat_4", "title": "dat_4.", "object": "dat_4", "class": [ "data.frame" ], "fields": [ "V1" ], "rows": 320, "table": true, "tojson": true }, { "name": "dat_5", "title": "dat_5.", "object": "dat_5", "class": [ "data.frame" ], "fields": [ "V1" ], "rows": 105, "table": true, "tojson": true }, { "name": "dat_6", "title": "dat_6.", "object": "dat_6", "class": [ "data.frame" ], "fields": [ "V1", "V2" ], "rows": 105, "table": true, "tojson": true }, { "name": "dat_7", "title": "dat_7.", "object": "dat_7", "class": [ "data.frame" ], "fields": [ "V1", "V2", "V3" ], "rows": 105, "table": true, "tojson": true }, { "name": "liposomes_214", "title": "liposomes_214.", "object": "liposomes_214", "class": [ "data.frame" ], "fields": [ "WELLNUM", "CONTENT", "CH", "M1", "M2", "M3", "M4", "M5", "M6", "M7", "M8", "M9", "M10", "M11", "M12", "M13", "M14", "M15", "M16", "M17", "M18", "M19", "M20", "M21", "M22", "M23", "M24", "M25", "M26", "M27", "M28", "M29", "M30", "M31", "M32", "M33", "M34", "M35", "M36", "M37", "M38", "M39", "M40", "PLATZ", "KONZ_CHAR", "KONZ_MANT", "TIME", "TEMP", "VOLPUMP1", "VOLPUMP2", "VOLPUMP3", "VOLPUMP4" ], "rows": 11, "table": true, "tojson": true }, { "name": "liposomes_215", "title": "liposomes_215.", "object": "liposomes_215", "class": [ "data.frame" ], "fields": [ "WELLNUM", "CONTENT", "CH", "M1", "M2", "M3", "M4", "M5", "M6", "M7", "M8", "M9", "M10", "M11", "M12", "M13", "M14", "M15", "M16", "M17", "M18", "M19", "M20", "M21", "M22", "M23", "M24", "M25", "M26", "M27", "M28", "M29", "M30", "M31", "M32", "M33", "M34", "M35", "M36", "M37", "M38", "M39", "M40", "PLATZ", "KONZ_CHAR", "KONZ_MANT", "TIME", "TEMP", "VOLPUMP1", "VOLPUMP2", "VOLPUMP3", "VOLPUMP4" ], "rows": 11, "table": true, "tojson": true }, { "name": "liposomes_216", "title": "liposomes_216.", "object": "liposomes_216", "class": [ "data.frame" ], "fields": [ "WELLNUM", "CONTENT", "CH", "M1", "M2", "M3", "M4", "M5", "M6", "M7", "M8", "M9", "M10", "M11", "M12", "M13", "M14", "M15", "M16", "M17", "M18", "M19", "M20", "M21", "M22", "M23", "M24", "M25", "M26", "M27", "M28", "M29", "M30", "M31", "M32", "M33", "M34", "M35", "M36", "M37", "M38", "M39", "M40", "PLATZ", "KONZ_CHAR", "KONZ_MANT", "TIME", "TEMP", "VOLPUMP1", "VOLPUMP2", "VOLPUMP3", "VOLPUMP4" ], "rows": 8, "table": true, "tojson": true }, { "name": "liposomes_218", "title": "liposomes_218.", "object": "liposomes_218", "class": [ "data.frame" ], "fields": [ "WELLNUM", "CONTENT", "CH", "M1", "M2", "M3", "M4", "M5", "M6", "M7", "M8", "M9", "M10", "M11", "M12", "M13", "M14", "M15", "M16", "M17", "M18", "M19", "M20", "M21", "M22", "M23", "M24", "M25", "M26", "M27", "M28", "M29", "M30", "M31", "M32", "M33", "M34", "M35", "M36", "M37", "M38", "M39", "M40", "PLATZ", "KONZ_CHAR", "KONZ_MANT", "TIME", "TEMP", "VOLPUMP1", "VOLPUMP2", "VOLPUMP3", "VOLPUMP4" ], "rows": 11, "table": true, "tojson": true }, { "name": "liposomes_221", "title": "liposomes_221.", "object": "liposomes_221", "class": [ "data.frame" ], "fields": [ "WELLNUM", "CONTENT", "CH", "M1", "M2", "M3", "M4", "M5", "M6", "M7", "M8", "M9", "M10", "M11", "M12", "M13", "M14", "M15", "M16", "M17", "M18", "M19", "M20", "M21", "M22", "M23", "M24", "M25", "M26", "M27", "M28", "M29", "M30", "M31", "M32", "M33", "M34", "M35", "M36", "M37", "M38", "M39", "M40", "PLATZ", "KONZ_CHAR", "KONZ_MANT", "TIME", "TEMP", "VOLPUMP1", "VOLPUMP2", "VOLPUMP3", "VOLPUMP4" ], "rows": 38, "table": true, "tojson": true }, { "name": "liposomes_227", "title": "liposomes_227.", "object": "liposomes_227", "class": [ "data.frame" ], "fields": [ "WELLNUM", "CONTENT", "CH", "M1", "M2", "M3", "M4", "M5", "M6", "M7", "M8", "M9", "M10", "M11", "M12", "M13", "M14", "M15", "M16", "M17", "M18", "M19", "M20", "M21", "M22", "M23", "M24", "M25", "M26", "M27", "M28", "M29", "M30", "M31", "M32", "M33", "M34", "M35", "M36", "M37", "M38", "M39", "M40", "PLATZ", "KONZ_CHAR", "KONZ_MANT", "TIME", "TEMP", "VOLPUMP1", "VOLPUMP2", "VOLPUMP3", "VOLPUMP4" ], "rows": 29, "table": true, "tojson": true } ], "_help": [ { "page": "grapes-there-grapes", "title": "The %there% operator", "concept": [ "operators" ], "topics": [ "%there%" ] }, { "page": "add_package_namespace", "title": "Add Package Namespace", "topics": [ "add_package_namespace" ] }, { "page": "analyze", "title": "Analyze", "concept": [ "analyze" ], "topics": [ "analyze", "analyze_ready", "analyze_ready.1536well_plate_t1", "analyze_ready.1536well_plate_t2", "analyze_ready.384well_plate", "analyze_ready.96well_plate", "analyze_ready.default" ] }, { "page": "average_fluorescence_by_row_cycle", "title": "Capitalize", "topics": [ "average_fluorescence_by_row_cycle" ] }, { "page": "capitalize", "title": "Capitalize", "topics": [ "capitalize" ] }, { "page": "check_broken_packages", "title": "Check Broken Packages", "concept": [ "dev_helpers", "utils" ], "topics": [ "check_broken_packages" ] }, { "page": "check_dirt", "title": "Check Dirt", "concept": [ "plate_utils" ], "topics": [ "check_dirt" ] }, { "page": "check_package_usage", "title": "Check package or function Usage", "topics": [ "check_package_usage" ] }, { "page": "childtype", "title": "Child Type", "concept": [ "childtype" ], "topics": [ "childtype", "child_plate_type", "child_plate_type.default", "child_plate_type.normfluodbf_plate" ] }, { "page": "clean_commas", "title": "DAT file data frame cleaner.", "topics": [ "clean_commas" ] }, { "page": "cleandats", "title": "DAT file wrangler.", "topics": [ "clean_even_dat", "clean_odddat_optimus" ] }, { "page": "comma_cleaner", "title": "Comma Cleaner function.", "topics": [ "comma_cleaner" ] }, { "page": "comment_out_lines", "title": "Comment Out", "topics": [ "comment_out_lines" ] }, { "page": "dat_1", "title": "dat_1.", "topics": [ "dat_1" ] }, { "page": "dat_2", "title": "dat_2.", "topics": [ "dat_2" ] }, { "page": "dat_3", "title": "dat_3.", "topics": [ "dat_3" ] }, { "page": "dat_4", "title": "dat_4.", "topics": [ "dat_4" ] }, { "page": "dat_5", "title": "dat_5.", "topics": [ "dat_5" ] }, { "page": "dat_6", "title": "dat_6.", "topics": [ "dat_6" ] }, { "page": "dat_7", "title": "dat_7.", "topics": [ "dat_7" ] }, { "page": "dat_col_names_horizontal", "title": "Attribute(s) naming function.", "topics": [ "dat_col_names_horizontal" ] }, { "page": "dat_col_names_optimus", "title": "Attribute(s) naming function.", "topics": [ "dat_col_names_optimus" ] }, { "page": "dat_col_names_prime", "title": "Attribute(s) naming function.", "topics": [ "dat_col_names_prime" ] }, { "page": "dat_col_names_rigid", "title": "Attribute(s) naming function.", "topics": [ "dat_col_names_rigid" ] }, { "page": "defineparams", "title": "Define Plate Parameters", "concept": [ "defineparams" ], "topics": [ "defineparams", "define_params", "define_params.1536well_plate_t1", "define_params.1536well_plate_t2", "define_params.384well_plate", "define_params.96well_plate", "define_params.default", "set_default_params" ] }, { "page": "definestatus", "title": "Define Plate Status", "concept": [ "definestatus" ], "topics": [ "definestatus", "define_status", "define_status.1536well_plate_t1", "define_status.1536well_plate_t2", "define_status.384well_plate", "define_status.96well_plate", "define_status.default", "get_status_value", "set_default_status", "update_status_list" ] }, { "page": "definesteps", "title": "Define Plate Steps", "concept": [ "definesteps" ], "topics": [ "definesteps", "define_steps", "define_steps.1536well_plate_t1", "define_steps.1536well_plate_t2", "define_steps.384well_plate", "define_steps.96well_plate", "define_steps.default", "define_steps.normfluodbf_plate", "set_default_steps", "update_steps_list" ] }, { "page": "detectoutliers", "title": "Detect Outliers", "concept": [ "detectoutliers" ], "topics": [ "detectoutliers", "detect_outliers_cn", "detect_outliers_time_cn" ] }, { "page": "dirutils", "title": "Directory Utils", "concept": [ "dirutils" ], "topics": [ "attach_dbfs", "dirutils", "find_known_liposome_dat_file", "find_known_liposome_dbf_file", "is_dir", "is_file", "list_dats", "list_dbfs", "read_dbfs" ] }, { "page": "find_random_port", "title": "Random Port Normfluodbf Style", "topics": [ "find_random_port" ] }, { "page": "formatplatedata", "title": "Format Plate Data", "concept": [ "formatplatedata" ], "topics": [ "formatplatedata", "format_plate_data", "format_plate_data.1536well_plate_t1", "format_plate_data.1536well_plate_t2", "format_plate_data.384well_plate", "format_plate_data.96well_plate", "format_plate_data.default" ] }, { "page": "get_wells_used", "title": "Wells Used", "concept": [ "plate_utils" ], "topics": [ "get_wells_used" ] }, { "page": "getfilename", "title": "Get File Name(s)", "concept": [ "getfilename" ], "topics": [ "getfilename", "get_common_dat_names", "get_dat_common_name", "get_dat_file_name", "get_dbf_file_name" ] }, { "page": "globalcache", "title": "Globals Cache", "topics": [ "globalcache" ] }, { "page": "isnormalized", "title": "Is Normalized", "topics": [ "isnormalized", "is_normalized" ] }, { "page": "launch", "title": "Run the shiny App checking dependencies in R code ... WARNING In addition to the functions provided in this package, the 'normfluodbf' package also provides an interactive tool that can be used to analyze liposome flux assay data more easily. The tool will be launched in a web browser.", "topics": [ "launch" ] }, { "page": "liposomes_214", "title": "liposomes_214.", "topics": [ "liposomes_214" ] }, { "page": "liposomes_215", "title": "liposomes_215.", "topics": [ "liposomes_215" ] }, { "page": "liposomes_216", "title": "liposomes_216.", "topics": [ "liposomes_216" ] }, { "page": "liposomes_218", "title": "liposomes_218.", "topics": [ "liposomes_218" ] }, { "page": "liposomes_221", "title": "liposomes_221.", "topics": [ "liposomes_221" ] }, { "page": "liposomes_227", "title": "liposomes_227.", "topics": [ "liposomes_227" ] }, { "page": "loadplatedata", "title": "Load Plate Data", "concept": [ "loadplatedata" ], "topics": [ "loadplatedata", "load_plate_data", "load_plate_data<-" ] }, { "page": "loadplatemeta", "title": "Load Plate Meta", "concept": [ "loadplatemeta" ], "topics": [ "loadplatemeta", "load_plate_meta", "load_plate_meta<-" ] }, { "page": "modifyplatedata", "title": "Modify Plate Data", "concept": [ "modifyplatedata" ], "topics": [ "modifyplatedata", "modify_plate_data", "modify_plate_data.1536well_plate_t1", "modify_plate_data.1536well_plate_t2", "modify_plate_data.384well_plate", "modify_plate_data.96well_plate", "modify_plate_data.default" ] }, { "page": "move_file", "title": "Move File", "topics": [ "move_file" ] }, { "page": "normalize", "title": "Normalize", "concept": [ "normalize" ], "topics": [ "normalize", "normalize.1536well_plate_t1", "normalize.1536well_plate_t2", "normalize.384well_plate", "normalize.96well_plate", "normalize.default", "normalize_dataframe" ] }, { "page": "normalizebywell", "title": "Normalize by Well", "concept": [ "normalizebywell" ], "topics": [ "normalizebywell", "normalize_by_well", "normalize_by_well.1536well_plate_t1", "normalize_by_well.1536well_plate_t2", "normalize_by_well.384well_plate", "normalize_by_well.96well_plate", "normalize_by_well.default" ] }, { "page": "normalizingagents", "title": "Normalizing Agents", "concept": [ "normfluodbf_utils" ], "topics": [ "decimal_scaling", "decimal_scaling_df", "log_transformation", "min_max_norm", "min_max_norm_df", "min_max_norm_percent", "min_max_norm_percent_df", "normalizingagents", "norm_z", "norm_z_df", "roundfluor" ] }, { "page": "normfluodbfplots", "title": "Plot Plate - Favorite is Fluostar style", "concept": [ "normfluodbfplots" ], "topics": [ "normfluodbfplots", "plot.1536well_plate_t1", "plot.1536well_plate_t2", "plot.384well_plate", "plot.96well_plate" ] }, { "page": "normalize_liposome_fluor_dats", "title": "Cleans and normalizes DAT files obtained from experiments using the FLUOstar Omega microplate reader (from BMG LABTECH).", "topics": [ "normfluodat", "normfluodatfull", "normfluodatlite", "normfluordat" ] }, { "page": "parenttype", "title": "Parent Type", "concept": [ "parenttype" ], "topics": [ "parenttype", "parent_plate_type", "parent_plate_type.1536well_plate_t1", "parent_plate_type.1536well_plate_t2", "parent_plate_type.384well_plate", "parent_plate_type.96well_plate", "parent_plate_type.default", "parent_plate_type.normfluodbf_plate" ] }, { "page": "plate", "title": "Plate", "concept": [ "plate" ], "topics": [ "empty_plate", "init_plate", "new_plate", "plate", "reset_plate", "setup_plate", "use_initialized_plate", "use_setup_plate" ] }, { "page": "plate_data_summary", "title": "Plate Data Summary", "concept": [ "plate_utils" ], "topics": [ "plate_data_summary" ] }, { "page": "plate_types", "title": "Plate Types Tibble", "topics": [ "plate_types", "plate_types_tbl", "plate_types_vector" ] }, { "page": "platedata", "title": "Plate Data", "concept": [ "platedata" ], "topics": [ "platedata", "plate_data" ] }, { "page": "platemeta", "title": "Plate Meta", "concept": [ "platemeta" ], "topics": [ "platemeta", "plate_meta", "plate_meta.1536well_plate_t1", "plate_meta.1536well_plate_t2", "plate_meta.384well_plate", "plate_meta.96well_plate", "plate_meta.default" ] }, { "page": "platename", "title": "Plate Name", "concept": [ "plate_utils" ], "topics": [ "name", "name<-", "platename" ] }, { "page": "printer", "title": "Print", "concept": [ "printer" ], "topics": [ "print.1536well_plate_t1", "print.1536well_plate_t2", "print.384well_plate", "print.96well_plate", "printer" ] }, { "page": "quiet", "title": "Quiet", "topics": [ "quiet" ] }, { "page": "remove_leading_zero", "title": "Format Well Names", "concept": [ "plate_utils" ], "topics": [ "remove_leading_zero" ] }, { "page": "removeoutliers", "title": "Outliers", "concept": [ "removeoutliers" ], "topics": [ "removeoutliers", "remove_outliers", "remove_outliers.1536well_plate_t1", "remove_outliers.1536well_plate_t2", "remove_outliers.384well_plate", "remove_outliers.96well_plate", "remove_outliers.default" ] }, { "page": "replace_word_in_file", "title": "Replace Word", "topics": [ "replace_word_in_file" ] }, { "page": "resamplescale", "title": "A function to create an attribute or column for each sample loaded into the microplate wells.", "topics": [ "resample_dat_scale", "resample_dat_scale_alt", "resample_dat_scale_alt_bfv", "resample_dat_scale_alt_bf_na", "resample_dat_scale_alt_na", "resample_dat_scale_naretainer", "resample_dat_scale_optimus", "resample_dat_scale_optimus_backend", "resample_dat_scale_optimus_na", "resample_vect_scale" ] }, { "page": "resample", "title": "A function to create an attribute or column for each sample loaded into the microplate wells.", "topics": [ "resample_dat", "resample_dat_alt", "resample_dat_vect" ] }, { "page": "run_demo", "title": "Run the shiny App In addition to the functions provided in this package, the 'normfluodbf' package also provides an interactive tool that can be used to analyze liposome flux assay data more easily. The tool will be launched in a web browser.", "topics": [ "run_demo" ] }, { "page": "run_demo_bg", "title": "Run Demo Background", "topics": [ "run_demo_bg" ] }, { "page": "run_demo_in_background", "title": "Run Demo in Background", "topics": [ "run_demo_in_background" ] }, { "page": "run_demo_script", "title": "Run Demo Script", "topics": [ "run_demo_script" ] }, { "page": "sampledata", "title": "Get Development Data", "concept": [ "dirutils" ], "topics": [ "sampledata", "sample_data_dir", "sample_data_file" ] }, { "page": "saveloadutils", "title": "Save and Load Plate", "concept": [ "plate_utils" ], "topics": [ "load_rds_plate", "saveloadutils", "save_plate", "save_rds_plate", "var_str" ] }, { "page": "set_assiette_type", "title": "Set The Plate Types", "topics": [ "set_assiette_type" ] }, { "page": "set_plate_type", "title": "Set The Child Plate Type", "topics": [ "set_plate_type" ] }, { "page": "set_plate_version", "title": "Plate Version", "concept": [ "plate_utils" ], "topics": [ "set_plate_version" ] }, { "page": "setsteps", "title": "Set Plate Steps", "concept": [ "steps" ], "topics": [ "setsteps", "steps", "steps<-" ] }, { "page": "shiny_random_port", "title": "Random Port gptstudio style", "topics": [ "shiny_random_port" ] }, { "page": "status", "title": "Status", "concept": [ "status" ], "topics": [ "dirty", "dirty<-", "is_plate_dirty", "status", "status<-" ] }, { "page": "stepspipeline", "title": "Steps Pipeline", "concept": [ "stepspipeline" ], "topics": [ ".next_step", "next_step", "run_steps", "stepspipeline" ] }, { "page": "stepsutils", "title": "Steps Utils", "concept": [ "steps" ], "topics": [ ".step_name", "check_step", "get_step_key_by_index", "has_step", "step", "stepsutils", "steps_complete", "step_begin", "step_end", "step_name" ] }, { "page": "testthatutils", "title": "Test Boilerplate", "topics": [ "open_testfile", "test_boilerplate" ] }, { "page": "type", "title": "Plate Type", "concept": [ "plate_utils" ], "topics": [ "type" ] }, { "page": "uploadplatedata", "title": "Upload Plate Data", "concept": [ "uploadplatedata" ], "topics": [ "uploadplatedata", "upload_data", "upload_data.1536well_plate_t1", "upload_data.1536well_plate_t2", "upload_data.384well_plate", "upload_data.96well_plate", "upload_data.default" ] }, { "page": "viewerpane_background_normfluodbf", "title": "View App in Viewer Pane", "topics": [ "viewerpane_background_normfluodbf" ] }, { "page": "wait_for_bg_shinyapp", "title": "Validate URL", "topics": [ "wait_for_bg_shinyapp" ] }, { "page": "xycoordinates", "title": "Plot Coordinates", "concept": [ "xycoordinates" ], "topics": [ "xycoordinates", "x_var_one", "x_var_one<-", "x_var_one_label", "x_var_one_label<-", "x_var_two", "x_var_two<-", "x_var_two_label", "x_var_two_label<-", "y_var", "y_var<-" ] } ], "_pkglogo": "https://github.com/alphaprime7/normfluodbf/raw/HEAD/man/figures/logo.png", "_readme": "https://github.com/alphaprime7/normfluodbf/raw/HEAD/README.md", "_rundeps": [ "askpass", "assertthat", "badger", "base64enc", "BiocManager", "brio", "bslib", "cachem", "callr", "cli", "clipr", "commonmark", "cpp11", "crayon", "credentials", "crosstalk", "curl", "data.table", "desc", "diffobj", "digest", "dlstats", "dplyr", "emojifont", "evaluate", "farver", "fastmap", "fontawesome", "fontBitstreamVera", "fontLiberation", "fontquiver", "forcats", "foreign", "fs", "gdtools", "generics", "gert", "ggfun", "ggimage", "ggiraph", "ggplot2", "ggplotify", "gh", "gitcreds", "glue", "gridExtra", "gridGraphics", "gtable", "hexbin", "hexSticker", "highr", "htmltools", "htmlwidgets", "httpuv", "httr", "httr2", "ini", "isoband", "jquerylib", "jsonlite", "knitr", "labeling", "later", "lattice", "lazyeval", "lifecycle", "magick", "magrittr", "MASS", "memoise", "mime", "openssl", "otel", "pbdZMQ", "pillar", "pkgbuild", "pkgconfig", "pkgload", "pkgsearch", "plotly", "praise", "processx", "promises", "proto", "ps", "purrr", "R6", "rappdirs", "RColorBrewer", "Rcpp", "rlang", "rmarkdown", "rprojroot", "rstudioapi", "rvcheck", "S7", "sass", "scales", "shiny", "showtext", "showtextdb", "sourcetools", "stringi", "stringr", "sys", "sysfonts", "systemfonts", "testthat", "tibble", "tidyr", "tidyselect", "tinytex", "usethis", "utf8", "vctrs", "viridisLite", "waldo", "wesanderson", "whisker", "withr", "xfun", "xtable", "yaml", "yulab.utils", "zip" ], "_vignettes": [ { "source": "Liposomes_Flux_Assays_Abstract.Rnw", "filename": "Liposomes_Flux_Assays_Abstract.pdf", "title": "LFA Abstract", "engine": "utils::Sweave", "headings": [], "created": "2025-10-24 00:58:39", "modified": "2025-10-25 07:00:15", "commits": 2 }, { "source": "lfa_beamer.Rnw", "filename": "lfa_beamer.pdf", "title": "LFA Beamer", "engine": "utils::Sweave", "headings": [], "created": "2025-05-03 05:37:40", "modified": "2025-10-24 00:58:39", "commits": 4 }, { "source": "lfa_Protocol.Rnw", "filename": "lfa_Protocol.pdf", "title": "LFA Protocol", "engine": "utils::Sweave", "headings": [], "created": "2025-10-24 00:58:39", "modified": "2025-10-24 00:58:39", "commits": 1 }, { "source": "lfa_ref.Rnw", "filename": "lfa_ref.pdf", "title": "LFA Ref", "engine": "utils::Sweave", "headings": [], "created": "2025-05-03 05:37:40", "modified": "2025-10-24 00:58:39", "commits": 4 }, { "source": "lfa_ref_two.Rnw", "filename": "lfa_ref_two.pdf", "title": "LFA Ref Two", "engine": "utils::Sweave", "headings": [], "created": "2025-10-17 19:56:22", "modified": "2025-10-24 00:58:39", "commits": 3 }, { "source": "lfa_seminar.Rnw", "filename": "lfa_seminar.pdf", "title": "LFA Seminar", "engine": "utils::Sweave", "headings": [], "created": "2025-05-03 05:37:40", "modified": "2025-10-24 00:58:39", "commits": 4 }, { "source": "normfluodbf.Rmd", "filename": "normfluodbf.html", "title": "normfluodbf", "engine": "knitr::rmarkdown", "headings": [ "๐Ÿ‘จ๐Ÿพโ€๐Ÿ’ป ๐Ÿ“ฆ What is r badger::badge_custom(\"normfluodbf\", \"1.5.2\", \"green\", \"https://github.com/AlphaPrime7\")?", "๐Ÿ’Š Package Context", "๐Ÿงฌ ๐Ÿ‘จโ€๐Ÿ”ฌ Abstract", "๐Ÿงช What are Liposome Flux Assays ?", "โ›ณ Specific Concepts Solved by normfluodbf 1.5.2", "๐ŸŒ๏ธ Who Should Use normfluodbf 1.5.2 ?", "๐Ÿค– ๐Ÿ’ฉ How did ChatGPT Help ?", "๐Ÿ”ฎ What the future holds ?", "๐Ÿป Cheers" ], "created": "2023-08-20 21:47:13", "modified": "2023-11-20 07:41:04", "commits": 15 }, { "source": "test_file.Rmd", "filename": "test_file.html", "title": "test_file", "engine": "knitr::rmarkdown", "headings": [ "๐ŸŽฌ Introduction", "๐Ÿ•ต๏ธ Normfluodat- MVP (Minimum Viable Product)", "๐Ÿ•ต๏ธ Normfluodatlite", "๐Ÿ•ต๏ธ Normfluodatfull", "๐Ÿ•ต๏ธ Normfluordat", "๐Ÿ•ต๏ธ Normfluordbf", "๐Ÿ•ต๏ธ Norm_tidy_dbf", "๐Ÿ•ต๏ธ Time Attribute", "๐Ÿ•ต๏ธ Visualize", "๐Ÿ•ต Final Remarks" ], "created": "2023-11-17 21:25:30", "modified": "2023-11-27 03:57:49", "commits": 4 } ], "_score": 5.447158031342219, "_indexed": true, "_nocasepkg": "normfluodbf", "_universes": [ "alphaprime7" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "2.0.3", "date": "2026-05-27T06:55:01.000Z", "distro": "noble", "commit": "70ab7265575b3c9a5e035f064c5cd8fad6708d99", "fileid": "2f79010c0c94eb923cb32d29e40368fbd58a12a2807dd681144a2ae06f7dcdd0", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/alphaprime7/actions/runs/26495572875" }, { "r": "4.6.0", "os": "linux", "version": "2.0.3", "date": "2026-05-27T06:55:08.000Z", "distro": "noble", "commit": "70ab7265575b3c9a5e035f064c5cd8fad6708d99", "fileid": "c4e55eec6c5ad2353eaf1edfb5237865d7db7b6264528d826b9e0230b25857ec", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/alphaprime7/actions/runs/26495572875" }, { "r": "4.5.3", "os": "mac", "version": "2.0.3", "date": "2026-05-27T06:55:51.000Z", "commit": "70ab7265575b3c9a5e035f064c5cd8fad6708d99", "fileid": "93f761bc07ecab7911d9ade0e4e571998cae5f0e94d48d4b7d0e9f7d2827bf9c", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/alphaprime7/actions/runs/26495572875" }, { "r": "4.6.0", "os": "mac", "version": "2.0.3", "date": "2026-05-27T06:56:54.000Z", "commit": "70ab7265575b3c9a5e035f064c5cd8fad6708d99", "fileid": "bf73f9c86ce2a134fd9f280c1c60716c3e886879ca77788e4b4aa452ca7fbd30", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/alphaprime7/actions/runs/26495572875" }, { "r": "4.6.0", "os": "wasm", "version": "2.0.3", "date": "2026-05-27T06:55:40.000Z", "commit": "70ab7265575b3c9a5e035f064c5cd8fad6708d99", "fileid": "36cb47e422d1ae19dd2fd4c4d69b1912db646a51e9378e3e6eba9eda913b8d2d", "status": "success", "buildurl": "https://github.com/r-universe/alphaprime7/actions/runs/26495572875" }, { "r": "4.7.0", "os": "win", "version": "2.0.3", "date": "2026-05-27T06:54:01.000Z", "commit": "70ab7265575b3c9a5e035f064c5cd8fad6708d99", "fileid": "f6d5d9d900d88f9fecf5a2d50bbf374454e4585fd8350d53b4552637b8c8aeb7", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/alphaprime7/actions/runs/26495572875" }, { "r": "4.5.3", "os": "win", "version": "2.0.3", "date": "2026-05-27T06:54:05.000Z", "commit": "70ab7265575b3c9a5e035f064c5cd8fad6708d99", "fileid": "43fbf5c1d1793e9f90a3fc66bba8a0e0490cb965703c0ad86c0c467130946b91", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/alphaprime7/actions/runs/26495572875" }, { "r": "4.6.0", "os": "win", "version": "2.0.3", "date": "2026-05-27T06:53:47.000Z", "commit": "70ab7265575b3c9a5e035f064c5cd8fad6708d99", "fileid": "07f6abffedb422143e29a99908e67914eb644a541bcb20018e24ab6ac6926944", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/alphaprime7/actions/runs/26495572875" } ] }